#=GENOME_DIFF	1.0
#=AUTHOR	
MOB	597	4,3	REL606	5365	IS1	1	9	gene_list=yaaX	gene_name=yaaX	gene_position=coding (134-142/297 nt)	gene_product=hypothetical protein	gene_strand=>	locus_tag=ECB_00005
SNP	608	165	REL606	70867	C	aa_new_seq=G	aa_position=92	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=araA	gene_name=araA	gene_position=275	gene_product=L-arabinose isomerase	gene_strand=<	locus_tag=ECB_00064	snp_type=nonsynonymous
SNP	609	166	REL606	145547	A	gene_name=yadF/yadG	gene_position=intergenic (-74/-35)	gene_product=carbonic anhydrase/predicted transporter subunit: ATP-binding component of ABC superfamily	locus_tag=ECB_00125/ECB_00126	snp_type=intergenic
DEL	610	188	REL606	352305	1	gene_name=frmR/yaiO	gene_position=intergenic (-67/+119)	gene_product=regulator protein that represses frmRAB operon/hypothetical protein	locus_tag=ECB_00311/ECB_00312	snp_type=intergenic
DEL	611	192	REL606	430082	1	gene_list=insL-2	gene_name=insL-2	gene_position=coding (706/1113 nt)	gene_product=putative transposase insL for insertion sequence IS186	gene_strand=<	locus_tag=ECB_00390
SNP	612	194	REL606	430917	T	gene_name=insL-2/lon	gene_position=intergenic (-130/-26)	gene_product=putative transposase insL for insertion sequence IS186/DNA-binding ATP-dependent protease La	locus_tag=ECB_00390/ECB_00391	snp_type=intergenic
SNP	613	195	REL606	474965	C	aa_new_seq=*	aa_position=114	aa_ref_seq=L	codon_new_seq=TGA	codon_position=2	codon_ref_seq=TTA	gene_list=ybaL	gene_name=ybaL	gene_position=341	gene_product=predicted transporter with NAD(P)-binding Rossmann-fold domain	gene_strand=<	locus_tag=ECB_00429	snp_type=nonsynonymous
SNP	614	199	REL606	498193	C	aa_new_seq=P	aa_position=922	aa_ref_seq=P	codon_new_seq=CCC	codon_position=3	codon_ref_seq=CCG	gene_list=rhsD	gene_name=rhsD	gene_position=2766	gene_product=rhsD element protein	gene_strand=>	locus_tag=ECB_00448	snp_type=synonymous
SNP	615	270	REL606	949821	G	aa_new_seq=V	aa_position=57	aa_ref_seq=F	codon_new_seq=GTT	codon_position=1	codon_ref_seq=TTT	gene_list=lrp	gene_name=lrp	gene_position=169	gene_product=DNA-binding transcriptional dual regulator, leucine-binding	gene_strand=>	locus_tag=ECB_00893	snp_type=nonsynonymous
SNP	616	271	REL606	979486	G	aa_new_seq=A	aa_position=134	aa_ref_seq=S	codon_new_seq=GCT	codon_position=1	codon_ref_seq=TCT	gene_list=rpsA	gene_name=rpsA	gene_position=400	gene_product=30S ribosomal protein S1	gene_strand=>	locus_tag=ECB_00915	snp_type=nonsynonymous
MOB	598	15,9	REL606	998325	IS186	1	6	gene_list=ycbB	gene_name=ycbB	gene_position=coding (187-192/1848 nt)	gene_product=predicted carboxypeptidase	gene_strand=>	locus_tag=ECB_00929
AMP	605	14	REL606	1055619	6	2	gene_list=appC	gene_name=appC	gene_position=coding (789-794/1545 nt)	gene_product=cytochrome bd-II oxidase, subunit I	gene_strand=>	locus_tag=ECB_00981
AMP	606	21	REL606	1075803	8	2	gene_list=torA	gene_name=torA	gene_position=coding (258-265/2547 nt)	gene_product=trimethylamine N-oxide (TMAO) reductase I, catalytic subunit	gene_strand=>	locus_tag=ECB_01000
SNP	617	272	REL606	1083668	T	aa_new_seq=A	aa_position=108	aa_ref_seq=A	codon_new_seq=GCA	codon_position=3	codon_ref_seq=GCG	gene_list=wrbA	gene_name=wrbA	gene_position=324	gene_product=TrpR binding protein WrbA	gene_strand=<	locus_tag=ECB_01007	snp_type=synonymous
SNP	618	273	REL606	1094669	T	aa_new_seq=I	aa_position=166	aa_ref_seq=M	codon_new_seq=ATA	codon_position=3	codon_ref_seq=ATG	gene_list=putA	gene_name=putA	gene_position=498	gene_product=fused DNA-binding transcriptional regulator/proline dehydrogenase/pyrroline-5-carboxylate dehydrogenase	gene_strand=<	locus_tag=ECB_01017	snp_type=nonsynonymous
DEL	619	283	REL606	1145691	1	gene_list=flgB	gene_name=flgB	gene_position=coding (102/417 nt)	gene_product=flagellar basal-body rod protein B	gene_strand=>	locus_tag=ECB_01069
AMP	607	20	REL606	1345572	9	2	gene_list=rnb	gene_name=rnb	gene_position=coding (1702-1710/1935 nt)	gene_product=exoribonuclease II	gene_strand=<	locus_tag=ECB_01263
SNP	620	336	REL606	1574912	G	aa_new_seq=S	aa_position=219	aa_ref_seq=Y	codon_new_seq=TCT	codon_position=2	codon_ref_seq=TAT	gene_list=yneE	gene_name=yneE	gene_position=656	gene_product=conserved inner membrane protein	gene_strand=<	locus_tag=ECB_01477	snp_type=nonsynonymous
INS	621	363	REL606	1624013	A	gene_name=ECB_01539/ECB_01540	gene_position=intergenic (+59/-56)	gene_product=protein similar to DicA, regulator of DicB encoded by prophage CP-933O/conserved hypothetical protein	locus_tag=ECB_01539/ECB_01540	snp_type=intergenic
DEL	592	364,8	REL606	1633388	6	gene_list=speG	gene_name=speG	gene_position=coding (10-15/561 nt)	gene_product=spermidine N1-acetyltransferase	gene_strand=>	locus_tag=ECB_01553
SNP	622	366	REL606	1734106	C	aa_new_seq=A	aa_position=381	aa_ref_seq=G	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GGT	gene_list=pykF	gene_name=pykF	gene_position=1142	gene_product=pyruvate kinase	gene_strand=>	locus_tag=ECB_01645	snp_type=nonsynonymous
SNP	623	367	REL606	1756846	T	gene_name=ydiP/ydiQ	gene_position=intergenic (-277/-39)	gene_product=predicted DNA-binding transcriptional regulator/hypothetical protein	locus_tag=ECB_01665/ECB_01666	snp_type=intergenic
SNP	624	376	REL606	2016830	A	aa_new_seq=*	aa_position=226	aa_ref_seq=E	codon_new_seq=TAA	codon_position=1	codon_ref_seq=GAA	gene_list=yeeF	gene_name=yeeF	gene_position=676	gene_product=predicted amino-acid transporter	gene_strand=<	locus_tag=ECB_01917	snp_type=nonsynonymous
SNP	625	377	REL606	2017351	A	aa_new_seq=L	aa_position=52	aa_ref_seq=P	codon_new_seq=CTG	codon_position=2	codon_ref_seq=CCG	gene_list=yeeF	gene_name=yeeF	gene_position=155	gene_product=predicted amino-acid transporter	gene_strand=<	locus_tag=ECB_01917	snp_type=nonsynonymous
MOB	599	7,17	REL606	2322340	IS186	-1	6	gene_list=menC	gene_name=menC	gene_position=coding (131-136/963 nt)	gene_product=O-succinylbenzoate synthase	gene_strand=<	locus_tag=ECB_02188
SNP	626	407	REL606	2348815	C	gene_name=nuoA/lrhA	gene_position=intergenic (-152/+479)	gene_product=NADH dehydrogenase subunit A/DNA-binding transcriptional repressor of flagellar, motility and chemotaxis genes	locus_tag=ECB_02213/ECB_02214	snp_type=intergenic
SNP	627	409	REL606	2409891	C	aa_new_seq=T	aa_position=50	aa_ref_seq=K	codon_new_seq=ACA	codon_position=2	codon_ref_seq=AAA	gene_list=yfdC	gene_name=yfdC	gene_position=149	gene_product=predicted inner membrane protein	gene_strand=>	locus_tag=ECB_02273	snp_type=nonsynonymous
MOB	600	29,23	REL606	2448493	IS186	1	6	gene_name=nupC/yfeA	gene_position=intergenic (+24/+21)	gene_product=nucleoside (except guanosine) transporter/predicted diguanylate cyclase	locus_tag=ECB_02302/ECB_02303	snp_type=intergenic
SNP	628	421	REL606	2585234	A	aa_new_seq=E	aa_position=58	aa_ref_seq=A	codon_new_seq=GAG	codon_position=2	codon_ref_seq=GCG	gene_list=yfhR	gene_name=yfhR	gene_position=173	gene_product=predicted peptidase	gene_strand=>	locus_tag=ECB_02426	snp_type=nonsynonymous
SNP	629	441	REL606	2847052	G	aa_new_seq=A	aa_position=10	aa_ref_seq=V	codon_new_seq=GCT	codon_position=2	codon_ref_seq=GTT	gene_list=recD	gene_name=recD	gene_position=29	gene_product=exonuclease V (RecBCD complex), alpha chain	gene_strand=<	locus_tag=ECB_02667	snp_type=nonsynonymous
MOB	601	28,19	REL606	2899615	IS150	-1	3	gene_list=yqeB	gene_name=yqeB	gene_position=coding (378-380/1626 nt)	gene_product=conserved protein with NAD(P)-binding Rossman fold	gene_strand=<	locus_tag=ECB_02708
INS	630	444	REL606	2899617	T	gene_list=yqeB	gene_name=yqeB	gene_position=coding (378/1626 nt)	gene_product=conserved protein with NAD(P)-binding Rossman fold	gene_strand=<	locus_tag=ECB_02708
DEL	593	448,11	REL606	2996589	27356	gene_name=[ECB_02797]–ECB_02822	gene_product=<i><b>26 genes</b><BR>[ECB_02797], ECB_02798, yeeP, flu, yeeR, ECB_02802, yafZ, ECB_02804, yeeS, yeeT, yeeU, yeeV, yeeW, ECB_02810, ECB_02811, ECB_02812, ECB_02813, ECB_02814, ECB_02815, ECB_02816, ECB_02817, ECB_02818, ECB_02819, ECB_02820, ECB_02821, ECB_02822</i>	locus_tag=[ECB_02797]–[ECB_02822]	mediated=IS1
MOB	602	6,25	REL606	3028796	IS1	1	9	gene_name=ECB_02828/yghD	gene_position=intergenic (-335/+718)	gene_product=Polysialic acid transport protein kpsM/predicted secretion pathway M-type protein, membrane anchored	locus_tag=ECB_02828/ECB_02829	snp_type=intergenic
MOB	603	10,18	REL606	3035123	IS150	-1	3	gene_list=ECB_02836	gene_name=ECB_02836	gene_position=coding (317-319/1224 nt)	gene_product=hypothetical type II secretion protein GspF	gene_strand=<	locus_tag=ECB_02836
SNP	631	452	REL606	3279827	A	aa_new_seq=T	aa_position=217	aa_ref_seq=A	codon_new_seq=ACC	codon_position=1	codon_ref_seq=GCC	gene_list=yhbG	gene_name=yhbG	gene_position=649	gene_product=predicted transporter subunit: ATP-binding component of ABC superfamily	gene_strand=>	locus_tag=ECB_03066	snp_type=nonsynonymous
SNP	632	455	REL606	3328619	A	aa_new_seq=H	aa_position=120	aa_ref_seq=Q	codon_new_seq=CAT	codon_position=3	codon_ref_seq=CAG	gene_list=mreB	gene_name=mreB	gene_position=360	gene_product=cell wall structural complex MreBCD, actin-like component MreB	gene_strand=<	locus_tag=ECB_03110	snp_type=nonsynonymous
SNP	633	456	REL606	3339490	A	gene_name=fis/yhdJ	gene_position=intergenic (+32/-54)	gene_product=DNA-binding protein Fis/predicted methyltransferase	locus_tag=ECB_03119/ECB_03120	snp_type=intergenic
SNP	634	462	REL606	3369432	C	aa_new_seq=G	aa_position=50	aa_ref_seq=D	codon_new_seq=GGC	codon_position=2	codon_ref_seq=GAC	gene_list=rpsD	gene_name=rpsD	gene_position=149	gene_product=30S ribosomal protein S4	gene_strand=<	locus_tag=ECB_03147	snp_type=nonsynonymous
SNP	635	469	REL606	3439190	T	aa_new_seq=N	aa_position=157	aa_ref_seq=D	codon_new_seq=AAT	codon_position=1	codon_ref_seq=GAT	gene_list=yhfX	gene_name=yhfX	gene_position=469	gene_product=predicted amino acid racemase	gene_strand=<	locus_tag=ECB_03233	snp_type=nonsynonymous
SNP	636	470	REL606	3469030	C	aa_new_seq=S	aa_position=68	aa_ref_seq=L	codon_new_seq=TCA	codon_position=2	codon_ref_seq=TTA	gene_list=feoA	gene_name=feoA	gene_position=203	gene_product=ferrous iron transport protein A	gene_strand=>	locus_tag=ECB_03260	snp_type=nonsynonymous
DEL	594	471,13	REL606	3483359	4	gene_list=malT	gene_name=malT	gene_position=coding (1675-1678/2706 nt)	gene_product=transcriptional regulator MalT	gene_strand=>	locus_tag=ECB_03270
SNP	637	472	REL606	3490093	C	gene_name=glpG/glpE	gene_position=intergenic (-40/+5)	gene_product=predicted intramembrane serine protease/thiosulfate sulfurtransferase	locus_tag=ECB_03275/ECB_03276	snp_type=intergenic
SNP	638	524	REL606	3762480	T	aa_new_seq=L	aa_position=575	aa_ref_seq=R	codon_new_seq=CTC	codon_position=2	codon_ref_seq=CGC	gene_list=spoT	gene_name=spoT	gene_position=1724	gene_product=bifunctional (p)ppGpp synthetase II/ guanosine-3',5'-bis pyrophosphate 3'-pyrophosphohydrolase	gene_strand=>	locus_tag=ECB_03507	snp_type=nonsynonymous
DEL	595	527,16	REL606	3894997	836	gene_name=rbsD–[rbsA]	gene_product=rbsD, [rbsA]	locus_tag=[ECB_03634]–[ECB_03635]	mediated=IS150
SNP	639	531	REL606	3912149	G	aa_new_seq=M	aa_position=10	aa_ref_seq=M	codon_new_seq=GTG	codon_position=1	codon_ref_seq=CTG	gene_list=ilvL	gene_name=ilvL	gene_position=28	gene_product=ilvG operon leader peptide	gene_strand=>	locus_tag=ECB_03645	snp_type=synonymous
SNP	640	532	REL606	3912154	G	aa_new_seq=V	aa_position=11	aa_ref_seq=V	codon_new_seq=GTG	codon_position=3	codon_ref_seq=GTC	gene_list=ilvL	gene_name=ilvL	gene_position=33	gene_product=ilvG operon leader peptide	gene_strand=>	locus_tag=ECB_03645	snp_type=synonymous
SNP	641	545	REL606	4044245	A	aa_new_seq=C	aa_position=409	aa_ref_seq=G	codon_new_seq=TGC	codon_position=1	codon_ref_seq=GGC	gene_list=yihP	gene_name=yihP	gene_position=1225	gene_product=predicted transporter	gene_strand=<	locus_tag=ECB_03762	snp_type=nonsynonymous
SNP	642	547	REL606	4084816	T	aa_new_seq=T	aa_position=113	aa_ref_seq=A	codon_new_seq=ACG	codon_position=1	codon_ref_seq=GCG	gene_list=cpxR	gene_name=cpxR	gene_position=337	gene_product=DNA-binding response regulator in two-component regulatory system with CpxA	gene_strand=<	locus_tag=ECB_03798	snp_type=nonsynonymous
SNP	643	548	REL606	4101091	G	aa_new_seq=A	aa_position=47	aa_ref_seq=E	codon_new_seq=GCA	codon_position=2	codon_ref_seq=GAA	gene_list=hslU	gene_name=hslU	gene_position=140	gene_product=ATP-dependent protease ATP-binding subunit	gene_strand=<	locus_tag=ECB_03816	snp_type=nonsynonymous
SNP	644	565	REL606	4202388	C	aa_new_seq=A	aa_position=58	aa_ref_seq=S	codon_new_seq=GCC	codon_position=1	codon_ref_seq=TCC	gene_list=iclR	gene_name=iclR	gene_position=172	gene_product=DNA-binding transcriptional repressor	gene_strand=<	locus_tag=ECB_03890	snp_type=nonsynonymous
SNP	645	566	REL606	4204025	T	aa_new_seq=*	aa_position=423	aa_ref_seq=E	codon_new_seq=TAA	codon_position=1	codon_ref_seq=GAA	gene_list=metH	gene_name=metH	gene_position=1267	gene_product=B12-dependent methionine synthase	gene_strand=>	locus_tag=ECB_03891	snp_type=nonsynonymous
SNP	646	567	REL606	4266339	C	gene_name=acs/nrfA	gene_position=intergenic (-35/-358)	gene_product=acetyl-coenzyme A synthetase/nitrite reductase, formate-dependent, cytochrome	locus_tag=ECB_03941/ECB_03942	snp_type=intergenic
SNP	647	579	REL606	4414607	C	gene_name=fklB/cycA	gene_position=intergenic (+53/-256)	gene_product=FKBP-type peptidyl-prolyl cis-trans isomerase (rotamase)/D-alanine/D-serine/glycine transporter	locus_tag=ECB_04079/ECB_04080	snp_type=intergenic
MOB	604	22,5	REL606	4462693	IS1	-1	9	gene_name=yjgM/yjgN	gene_position=intergenic (-123/-62)	gene_product=predicted acetyltransferase/conserved inner membrane protein	locus_tag=ECB_04122/ECB_04123	snp_type=intergenic
DEL	596	584	REL606	4506110	16229	between=IS1	gene_name=sgcR–insA-27	gene_product=<i><b>18 genes</b><BR>sgcR, sgcE, sgcA, sgcQ, sgcC, sgcB, sgcX, yjhP, yjhQ, ECB_04174, yjhR, yjhR, yjhS, yjhT, yjhA, fimB, insB-27, insA-27</i>	locus_tag=[ECB_04165]–[ECB_04181]
SNP	648	590	REL606	4616409	G	aa_new_seq=C	aa_position=294	aa_ref_seq=Y	codon_new_seq=TGC	codon_position=2	codon_ref_seq=TAC	gene_list=nadR	gene_name=nadR	gene_position=881	gene_product=nicotinamide-nucleotide adenylyltransferase	gene_strand=>	locus_tag=ECB_04266	snp_type=nonsynonymous
SNP	649	591	REL606	4627793	G	aa_new_seq=T	aa_position=225	aa_ref_seq=I	codon_new_seq=ACC	codon_position=2	codon_ref_seq=ATC	gene_list=arcA	gene_name=arcA	gene_position=674	gene_product=DNA-binding response regulator in two-component regulatory system with ArcB or CpxA	gene_strand=<	locus_tag=ECB_04277	snp_type=nonsynonymous
RA	165		REL606	70867	0	T	C	frequency=1	new_cov=54/52	quality=339.2	ref_cov=0/0	tot_cov=54/52
RA	166		REL606	145547	0	G	A	frequency=1	new_cov=23/30	quality=190.5	ref_cov=0/0	tot_cov=23/30
RA	188		REL606	352305	0	C	.	frequency=1	new_cov=24/18	quality=242.2	ref_cov=0/0	tot_cov=24/18
RA	192		REL606	430082	0	T	.	frequency=1	new_cov=2/0	quality=5.5	ref_cov=0/0	tot_cov=2/0
RA	194		REL606	430917	0	C	T	frequency=1	new_cov=36/28	quality=202.7	ref_cov=0/0	tot_cov=36/28
RA	195		REL606	474965	0	A	C	frequency=1	new_cov=58/40	quality=313.8	ref_cov=0/0	tot_cov=58/40
RA	197		REL606	498187	0	G	C	frequency=1	new_cov=0/2	quality=0.6	ref_cov=0/0	reject=EVALUE	tot_cov=0/2
RA	199		REL606	498193	0	G	C	frequency=1	new_cov=0/4	quality=8.5	ref_cov=0/0	tot_cov=0/4
RA	203		REL606	555336	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	204		REL606	555631	0	C	A	deleted=1	frequency=1	new_cov=0/1	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	205		REL606	558290	0	G	T	deleted=1	frequency=1	new_cov=0/1	quality=-5.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	206		REL606	558302	0	T	A	deleted=1	frequency=1	new_cov=0/1	quality=-2.9	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	207		REL606	568845	0	C	G	deleted=1	frequency=1	new_cov=1/0	quality=-2.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	208		REL606	569058	0	C	A	deleted=1	frequency=1	new_cov=1/0	quality=-3.6	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	209		REL606	569063	0	C	A	deleted=1	frequency=1	new_cov=1/0	quality=-3.3	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	210		REL606	572616	0	G	A	deleted=1	frequency=1	new_cov=0/1	quality=-3.5	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	211		REL606	572618	0	C	T	deleted=1	frequency=1	new_cov=0/1	quality=-3.0	ref_cov=0/0	reject=EVALUE	tot_cov=0/1
RA	212		REL606	578427	0	A	T	deleted=1	frequency=1	new_cov=1/0	quality=-2.9	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	213		REL606	578429	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-3.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	214		REL606	578431	0	T	G	deleted=1	frequency=1	new_cov=1/0	quality=-3.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	215		REL606	578432	0	T	C	deleted=1	frequency=1	new_cov=1/0	quality=-4.0	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	216		REL606	578435	0	T	.	deleted=1	frequency=1	new_cov=1/0	quality=-0.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	270		REL606	949821	0	T	G	frequency=1	new_cov=31/39	quality=219.0	ref_cov=0/1	tot_cov=31/40
RA	271		REL606	979486	0	T	G	frequency=1	new_cov=31/46	quality=244.4	ref_cov=0/0	tot_cov=31/46
RA	272		REL606	1083668	0	C	T	frequency=1	new_cov=22/31	quality=176.7	ref_cov=0/0	tot_cov=22/31
RA	273		REL606	1094669	0	C	T	frequency=1	new_cov=27/53	quality=263.9	ref_cov=1/0	tot_cov=28/54
RA	283		REL606	1145691	0	T	.	frequency=1	new_cov=27/26	quality=304.7	ref_cov=0/0	tot_cov=27/26
RA	336		REL606	1574912	0	T	G	frequency=1	new_cov=62/38	quality=345.5	ref_cov=0/0	tot_cov=63/38
RA	338		REL606	1600686	0	C	.	frequency=1	new_cov=1/0	quality=-0.7	ref_cov=0/0	reject=EVALUE	tot_cov=1/0
RA	363		REL606	1624013	1	.	A	frequency=1	new_cov=20/9	quality=87.7	ref_cov=0/1	tot_cov=20/10
RA	366		REL606	1734106	0	G	C	frequency=1	new_cov=27/51	quality=263.4	ref_cov=0/0	tot_cov=27/51
RA	367		REL606	1756846	0	C	T	frequency=1	new_cov=26/25	quality=175.0	ref_cov=0/0	tot_cov=26/25
RA	376		REL606	2016830	0	C	A	frequency=1	new_cov=28/37	quality=224.3	ref_cov=0/0	tot_cov=28/37
RA	377		REL606	2017351	0	G	A	frequency=1	new_cov=44/39	quality=273.0	ref_cov=0/0	tot_cov=44/39
RA	396		REL606	2122430	0	A	C	deleted=1	frequency=1	new_cov=4/2	quality=15.0	ref_cov=0/0	tot_cov=4/2
RA	407		REL606	2348815	0	A	C	frequency=1	new_cov=29/28	quality=189.8	ref_cov=0/0	tot_cov=29/28
RA	409		REL606	2409891	0	A	C	frequency=1	new_cov=39/23	quality=193.0	ref_cov=0/0	tot_cov=39/23
RA	421		REL606	2585234	0	C	A	frequency=1	new_cov=39/14	quality=167.7	ref_cov=0/0	tot_cov=39/14
RA	441		REL606	2847052	0	A	G	frequency=1	new_cov=30/54	quality=274.3	ref_cov=0/0	tot_cov=30/54
RA	444		REL606	2899617	1	.	T	frequency=1	new_cov=19/20	quality=100.8	ref_cov=1/4	tot_cov=20/24
RA	452		REL606	3279827	0	G	A	frequency=1	new_cov=33/41	quality=229.9	ref_cov=0/0	tot_cov=33/42
RA	455		REL606	3328619	0	C	A	frequency=1	new_cov=39/24	quality=211.4	ref_cov=0/0	tot_cov=39/24
RA	456		REL606	3339490	0	C	A	frequency=1	new_cov=23/14	quality=123.5	ref_cov=0/0	tot_cov=23/14
RA	462		REL606	3369432	0	T	C	frequency=1	new_cov=42/49	quality=310.1	ref_cov=0/0	tot_cov=42/49
RA	469		REL606	3439190	0	C	T	frequency=1	new_cov=33/25	quality=204.2	ref_cov=0/0	tot_cov=33/25
RA	470		REL606	3469030	0	T	C	frequency=1	new_cov=24/39	quality=210.8	ref_cov=0/0	tot_cov=24/39
RA	472		REL606	3490093	0	A	C	frequency=1	new_cov=35/52	quality=301.6	ref_cov=1/0	tot_cov=36/52
RA	524		REL606	3762480	0	G	T	frequency=1	new_cov=38/43	quality=273.8	ref_cov=0/0	tot_cov=38/43
RA	531		REL606	3912149	0	C	G	frequency=1	new_cov=13/25	quality=123.3	ref_cov=0/0	tot_cov=13/25
RA	532		REL606	3912154	0	C	G	frequency=1	new_cov=8/13	quality=67.5	ref_cov=0/0	tot_cov=8/13
RA	545		REL606	4044245	0	C	A	frequency=1	new_cov=45/54	quality=338.1	ref_cov=0/0	tot_cov=45/54
RA	547		REL606	4084816	0	C	T	frequency=1	new_cov=38/60	quality=320.8	ref_cov=0/0	tot_cov=39/61
RA	548		REL606	4101091	0	T	G	frequency=1	new_cov=55/29	quality=277.2	ref_cov=0/0	tot_cov=55/29
RA	565		REL606	4202388	0	A	C	frequency=1	new_cov=33/54	quality=269.1	ref_cov=0/0	tot_cov=33/54
RA	566		REL606	4204025	0	G	T	frequency=1	new_cov=29/53	quality=283.2	ref_cov=0/0	tot_cov=29/53
RA	567		REL606	4266339	0	T	C	frequency=1	new_cov=24/37	quality=208.4	ref_cov=0/0	tot_cov=24/37
RA	579		REL606	4414607	0	A	C	frequency=1	new_cov=26/44	quality=241.5	ref_cov=0/0	tot_cov=26/44
RA	590		REL606	4616409	0	A	G	frequency=1	new_cov=39/42	quality=275.4	ref_cov=0/1	tot_cov=39/43
RA	591		REL606	4627793	0	A	G	frequency=1	new_cov=42/23	quality=214.4	ref_cov=0/0	tot_cov=42/23
MC	218		REL606	546952	590298	746	1801	left_inside_cov=23	left_outside_cov=25	right_inside_cov=23	right_outside_cov=24
MC	364		REL606	1633388	1633393	0	0	left_inside_cov=0	left_outside_cov=108	right_inside_cov=0	right_outside_cov=110
MC	385		REL606	2037725	2048102	0	0	left_inside_cov=0	left_outside_cov=64	right_inside_cov=0	right_outside_cov=72
MC	397		REL606	2100301	2122440	6	13	left_inside_cov=22	left_outside_cov=24	right_inside_cov=23	right_outside_cov=25
MC	448		REL606	2996589	3024687	0	742	left_inside_cov=0	left_outside_cov=90	right_inside_cov=23	right_outside_cov=24
MC	471		REL606	3483359	3483362	0	0	left_inside_cov=0	left_outside_cov=101	right_inside_cov=0	right_outside_cov=102
MC	527		REL606	3893580	3895832	1416	0	left_inside_cov=23	left_outside_cov=26	right_inside_cov=0	right_outside_cov=85
MC	584		REL606	4505369	4522311	742	740	left_inside_cov=20	left_outside_cov=25	right_inside_cov=22	right_outside_cov=25
JC	27		REL606	1	1	REL606	4629812	-1	0	alignment_overlap=0	circular_chromosome=1	coverage_minus=30	coverage_plus=35	flanking_left=36	flanking_right=36	key=REL606__1__1__REL606__4629812__0__0____36__36__0__0	max_left=35	max_left_minus=35	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=18	max_min_right_minus=18	max_min_right_plus=16	max_right=35	max_right_minus=35	max_right_plus=33	min_overlap_score=569	pos_hash_score=40	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=65	total_reads=65
JC	4		REL606	5365	1	REL606	4551446	-1	0	alignment_overlap=2	coverage_minus=40	coverage_plus=65	flanking_left=36	flanking_right=36	key=REL606__5365__1__REL606__4551448__0__2____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=14	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=906	pos_hash_score=49	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=105	total_reads=124
JC	3		REL606	5373	-1	REL606	2035093	-1	0	alignment_overlap=3	coverage_minus=38	coverage_plus=52	flanking_left=36	flanking_right=36	key=REL606__5374__0__REL606__2035095__0__3____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=16	max_min_right_minus=14	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=32	min_overlap_score=835	pos_hash_score=49	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=90	total_reads=127
JC	7		REL606	15386	1	REL606	2322340	1	0	alignment_overlap=5	coverage_minus=16	coverage_plus=42	flanking_left=36	flanking_right=36	key=REL606__15384__1__REL606__2322337__1__5____36__36__1__0	max_left=30	max_left_minus=29	max_left_plus=30	max_min_left=15	max_min_left_minus=13	max_min_left_plus=15	max_min_right=15	max_min_right_minus=12	max_min_right_plus=15	max_right=28	max_right_minus=26	max_right_plus=28	min_overlap_score=537	pos_hash_score=31	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=58	total_reads=107
JC	23		REL606	15386	1	REL606	2448498	-1	0	alignment_overlap=4	coverage_minus=27	coverage_plus=41	flanking_left=36	flanking_right=36	key=REL606__15385__1__REL606__2448501__0__4____36__36__1__0	max_left=31	max_left_minus=30	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=15	max_right=31	max_right_minus=31	max_right_plus=30	min_overlap_score=494	pos_hash_score=40	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=68	total_reads=73
JC	2		REL606	16728	-1	REL606	2713428	1	0	alignment_overlap=5	coverage_minus=42	coverage_plus=40	flanking_left=36	flanking_right=36	key=REL606__16730__0__REL606__2713425__1__5____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=14	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=632	pos_hash_score=38	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=82	total_reads=231
JC	15		REL606	16728	-1	REL606	998325	1	0	alignment_overlap=6	coverage_minus=28	coverage_plus=38	flanking_left=36	flanking_right=36	key=REL606__16731__0__REL606__998322__1__6____36__36__1__0	max_left=29	max_left_minus=24	max_left_plus=29	max_min_left=14	max_min_left_minus=14	max_min_left_plus=14	max_min_right=15	max_min_right_minus=14	max_min_right_plus=15	max_right=29	max_right_minus=29	max_right_plus=29	min_overlap_score=527	pos_hash_score=41	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=66	total_reads=87
JC	150		REL606	33985	1	REL606	896180	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__33985__1__REL606__896180__0__-1__C__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=0	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	158		REL606	62419	1	REL606	2187775	1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__62419__1__REL606__2187772__1__3____36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=0	max_right_plus=31	min_overlap_score=15	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	117		REL606	62424	1	REL606	3320061	1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__62424__1__REL606__3320061__1__-4__CGCA__36__36__0__0	max_left=0	max_left_minus=0	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=-3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CGCA
JC	112		REL606	62426	1	REL606	62436	1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__62426__1__REL606__62436__1__-3__GCC__36__36__0__0	max_left=4	max_left_minus=0	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GCC
JC	106		REL606	62448	-1	REL606	252831	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__62448__0__REL606__252834__0__3____36__36__0__0	max_left=31	max_left_minus=31	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	98		REL606	75348	-1	REL606	4496085	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__75348__0__REL606__4496088__0__3____36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_right=32	max_right_minus=0	max_right_plus=32	min_overlap_score=10	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	115		REL606	100702	1	REL606	1077800	1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__100702__1__REL606__1077797__1__3____36__36__0__0	max_left=19	max_left_minus=19	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	95		REL606	103314	-1	REL606	1968157	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__103314__0__REL606__1968166__0__9____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=18	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	141		REL606	114394	1	REL606	1101057	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__114394__1__REL606__1101055__1__2____36__36__0__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	143		REL606	164771	-1	REL606	758054	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__164771__0__REL606__758054__1__-5__AACGT__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=AACGT
JC	148		REL606	169183	1	REL606	379601	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__169183__1__REL606__379601__1__0____36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=18	max_right_minus=0	max_right_plus=18	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	87		REL606	180081	-1	REL606	1182065	-1	-4	alignment_overlap=-4	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__180081__0__REL606__1182065__0__-4__GAAC__36__36__0__1	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=22	max_right_minus=0	max_right_plus=22	min_overlap_score=32	pos_hash_score=3	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=3	total_reads=3	unique_read_sequence=GAAC
JC	44		REL606	199734	1	REL606	1146691	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__199734__1__REL606__1146683__1__8____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=103	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=17	total_reads=17
JC	61		REL606	199734	1	REL606	2345075	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__199734__1__REL606__2345083__0__8____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=70	pos_hash_score=6	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	134		REL606	218938	1	REL606	4574310	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__218939__1__REL606__4574310__1__1____36__36__1__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	26		REL606	241257	1	REL606	2037724	-1	0	alignment_overlap=2	coverage_minus=23	coverage_plus=40	flanking_left=36	flanking_right=36	key=REL606__241255__1__REL606__2037724__0__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=33	max_right_minus=31	max_right_plus=33	min_overlap_score=554	pos_hash_score=39	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=63	total_reads=66
JC	144		REL606	252027	1	REL606	3603943	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__252035__1__REL606__3603943__0__8____36__36__1__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=0	max_min_right_plus=7	max_right=7	max_right_minus=0	max_right_plus=7	min_overlap_score=13	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=8	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	92		REL606	252886	1	REL606	349787	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__252886__1__REL606__349787__0__0____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	91		REL606	252905	1	REL606	349706	-1	0	alignment_overlap=0	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__252905__1__REL606__349706__0__0____36__36__1__0	max_left=21	max_left_minus=21	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=27	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	130		REL606	312390	1	REL606	312605	-1	0	alignment_overlap=15	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__312405__1__REL606__312605__0__15____36__36__1__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=15	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	151		REL606	312589	-1	REL606	4005977	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__312589__0__REL606__4005977__0__0____36__36__0__1	max_left=11	max_left_minus=0	max_left_plus=11	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=11	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	88		REL606	312590	1	REL606	2583278	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__312590__1__REL606__2583281__0__3____36__36__0__0	max_left=16	max_left_minus=11	max_left_plus=16	max_min_left=16	max_min_left_minus=11	max_min_left_plus=16	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=24	max_right_minus=20	max_right_plus=24	min_overlap_score=62	pos_hash_score=5	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=3
JC	96		REL606	312591	1	REL606	333730	-1	0	alignment_overlap=13	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__312591__1__REL606__333743__0__13____36__36__0__0	max_left=21	max_left_minus=21	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=13	max_right_minus=2	max_right_plus=13	min_overlap_score=12	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	119		REL606	312594	1	REL606	3150232	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__312594__1__REL606__3150221__1__11____36__36__0__0	max_left=9	max_left_minus=0	max_left_plus=9	max_min_left=9	max_min_left_minus=0	max_min_left_plus=9	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	149		REL606	312626	-1	REL606	4603893	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__312626__0__REL606__4603902__0__9____36__36__0__0	max_left=21	max_left_minus=0	max_left_plus=21	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=4	max_min_right_minus=0	max_min_right_plus=4	max_right=4	max_right_minus=0	max_right_plus=4	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	103		REL606	322250	1	REL606	322621	-1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__322250__1__REL606__322622__0__1____36__36__0__0	max_left=20	max_left_minus=0	max_left_plus=20	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=15	max_min_right_minus=0	max_min_right_plus=15	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	102		REL606	347533	-1	REL606	3523274	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__347533__0__REL606__3523274__0__0____36__36__0__1	max_left=1	max_left_minus=1	max_left_plus=0	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=35	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	24		REL606	353264	1	REL606	2048103	1	0	alignment_overlap=1	coverage_minus=23	coverage_plus=42	flanking_left=36	flanking_right=36	key=REL606__353263__1__REL606__2048103__1__1____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=17	max_min_right_minus=13	max_min_right_plus=17	max_right=34	max_right_minus=32	max_right_plus=34	min_overlap_score=619	pos_hash_score=38	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=65	total_reads=72
JC	1		REL606	377516	-1	REL606	1748420	-1	0	alignment_overlap=4	coverage_minus=87	coverage_plus=100	flanking_left=36	flanking_right=36	key=REL606__377519__0__REL606__1748421__0__4____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=1584	pos_hash_score=57	side_1_annotate_key=repeat	side_1_overlap=1	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=3	side_2_redundant=0	total_non_overlap_reads=187	total_reads=348
JC	147		REL606	379692	-1	REL606	379890	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__379692__0__REL606__379890__0__0____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	56		REL606	383086	-1	REL606	662940	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__383086__0__REL606__662931__1__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=52	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	84		REL606	391603	1	REL606	3171056	1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__391603__1__REL606__3171042__1__14____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=25	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=4	total_reads=4
JC	64		REL606	412572	1	REL606	1451402	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__412572__1__REL606__1451412__0__10____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=50	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	55		REL606	428398	-1	REL606	3186841	-1	0	alignment_overlap=12	coverage_minus=12	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__428398__0__REL606__3186853__0__12____36__36__0__0	max_left=23	max_left_minus=23	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=47	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	29		REL606	429502	1	REL606	2448493	1	0	alignment_overlap=5	coverage_minus=15	coverage_plus=33	flanking_left=36	flanking_right=36	key=REL606__429500__1__REL606__2448490__1__5____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=15	max_min_left_minus=14	max_min_left_plus=15	max_min_right=15	max_min_right_minus=11	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=349	pos_hash_score=30	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=48	total_reads=56
JC	9		REL606	430844	-1	REL606	998330	-1	0	alignment_overlap=2	coverage_minus=42	coverage_plus=23	flanking_left=36	flanking_right=36	key=REL606__430844__0__REL606__998332__0__2____36__36__1__0	max_left=33	max_left_minus=32	max_left_plus=33	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=15	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=530	pos_hash_score=40	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=65	total_reads=106
JC	126		REL606	462025	1	REL606	523517	1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__462025__1__REL606__523507__1__10____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	121		REL606	462108	-1	REL606	2928095	-1	0	alignment_overlap=7	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__462108__0__REL606__2928102__0__7____36__36__0__1	max_left=22	max_left_minus=22	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	140		REL606	480643	1	REL606	2293985	1	0	alignment_overlap=5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__480648__1__REL606__2293985__1__5____36__36__1__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=5	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	145		REL606	517590	-1	REL606	1686254	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__517590__0__REL606__1686262__0__8____36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	99		REL606	523507	1	REL606	4467442	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__523507__1__REL606__4467449__0__7____36__36__0__1	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	123		REL606	523622	-1	REL606	4005890	1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__523622__0__REL606__4005889__1__1____36__36__0__1	max_left=4	max_left_minus=4	max_left_plus=0	max_min_left=4	max_min_left_minus=4	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=31	max_right_plus=0	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	54		REL606	539431	-1	REL606	3855588	-1	0	alignment_overlap=8	coverage_minus=13	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__539431__0__REL606__3855596__0__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=0	max_right=11	max_right_minus=11	max_right_plus=0	min_overlap_score=86	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=13	total_reads=13
JC	22		REL606	547699	-1	REL606	4462693	1	0	alignment_overlap=2	coverage_minus=15	coverage_plus=51	flanking_left=36	flanking_right=36	key=REL606__547701__0__REL606__4462693__1__2____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=17	max_min_right_minus=14	max_min_right_plus=17	max_right=33	max_right_minus=32	max_right_plus=33	min_overlap_score=507	pos_hash_score=38	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=66	total_reads=74
JC	50		REL606	558273	-1	REL606	1590595	-1	0	alignment_overlap=9	coverage_minus=14	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__558264__0__REL606__1590595__0__9____36__36__1__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=75	pos_hash_score=9	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=9	side_2_redundant=0	total_non_overlap_reads=14	total_reads=14
JC	28		REL606	588495	1	REL606	2899615	1	0	alignment_overlap=3	coverage_minus=25	coverage_plus=25	flanking_left=36	flanking_right=36	key=REL606__588494__1__REL606__2899613__1__3____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=31	max_min_left=15	max_min_left_minus=15	max_min_left_plus=15	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=19	max_right_minus=19	max_right_plus=19	min_overlap_score=441	pos_hash_score=27	side_1_annotate_key=repeat	side_1_overlap=2	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=50	total_reads=60
JC	17		REL606	592057	-1	REL606	2322345	-1	0	alignment_overlap=5	coverage_minus=34	coverage_plus=32	flanking_left=36	flanking_right=36	key=REL606__592059__0__REL606__2322348__0__5____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=30	max_min_left=15	max_min_left_minus=15	max_min_left_plus=13	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=29	max_right_minus=29	max_right_plus=29	min_overlap_score=504	pos_hash_score=37	side_1_annotate_key=repeat	side_1_overlap=3	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=66	total_reads=82
JC	114		REL606	592063	-1	REL606	1135783	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__592068__0__REL606__1135783__0__5____36__36__0__0	max_left=28	max_left_minus=0	max_left_plus=28	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=0	max_min_right_plus=1	max_right=1	max_right_minus=0	max_right_plus=1	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=5	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	69		REL606	638675	-1	REL606	1490650	-1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__638675__0__REL606__1490662__0__12____36__36__0__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=12	max_min_right_minus=0	max_min_right_plus=12	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=51	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	16		REL606	666130	-1	REL606	3895833	1	0	alignment_overlap=1	coverage_minus=30	coverage_plus=49	flanking_left=36	flanking_right=36	key=REL606__666131__0__REL606__3895833__1__1____36__36__1__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=653	pos_hash_score=47	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=1	side_2_redundant=0	total_non_overlap_reads=79	total_reads=85
JC	83		REL606	668954	1	REL606	1638318	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=5	flanking_left=36	flanking_right=36	key=REL606__668954__1__REL606__1638328__0__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=22	pos_hash_score=4	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	160		REL606	678415	-1	REL606	1128064	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__678415__0__REL606__1128053__1__11____36__36__0__1	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=0	max_min_right_plus=3	max_right=3	max_right_minus=0	max_right_plus=3	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	128		REL606	710609	-1	REL606	1257483	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__710609__0__REL606__1257486__0__3____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=0	max_min_right_plus=9	max_right=9	max_right_minus=0	max_right_plus=9	min_overlap_score=9	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	127		REL606	759229	-1	REL606	768573	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__759229__0__REL606__768573__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	36		REL606	774276	-1	REL606	2491441	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=22	flanking_left=36	flanking_right=36	key=REL606__774276__0__REL606__2491431__1__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=83	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=22	total_reads=22
JC	77		REL606	774282	-1	REL606	4303491	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__774282__0__REL606__4303479__1__12____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=35	pos_hash_score=5	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=6
JC	57		REL606	789261	-1	REL606	2553881	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__789261__0__REL606__2553870__1__11____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=62	pos_hash_score=10	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	82		REL606	825662	1	REL606	3128043	1	0	alignment_overlap=2	coverage_minus=1	coverage_plus=4	flanking_left=36	flanking_right=36	key=REL606__825662__1__REL606__3128041__1__2____36__36__0__0	max_left=10	max_left_minus=8	max_left_plus=10	max_min_left=10	max_min_left_minus=8	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=25	max_right_plus=23	min_overlap_score=47	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=5	total_reads=5
JC	46		REL606	846302	1	REL606	4311817	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__846302__1__REL606__4311827__0__10____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=58	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	125		REL606	850236	1	REL606	2575506	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__850241__1__REL606__2575506__0__5____36__36__1__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=0	max_min_right_plus=7	max_right=7	max_right_minus=0	max_right_plus=7	min_overlap_score=7	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=5	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	48		REL606	856821	1	REL606	2169877	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__856821__1__REL606__2169886__0__9____36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=55	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=15	total_reads=15
JC	75		REL606	876636	-1	REL606	3886728	-1	0	alignment_overlap=10	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__876636__0__REL606__3886738__0__10____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=35	pos_hash_score=6	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	110		REL606	968482	1	REL606	4388408	-1	-7	alignment_overlap=-7	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__968482__1__REL606__4388408__0__-7__GATCGCC__36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GATCGCC
JC	30		REL606	986561	-1	REL606	1742069	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=79	flanking_left=36	flanking_right=36	key=REL606__986561__0__REL606__1742061__1__8____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=537	pos_hash_score=13	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=79	total_reads=79
JC	109		REL606	1001470	1	REL606	2968458	1	0	alignment_overlap=9	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1001470__1__REL606__2968449__1__9____36__36__0__1	max_left=13	max_left_minus=13	max_left_plus=0	max_min_left=13	max_min_left_minus=13	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	118		REL606	1001470	1	REL606	4603811	1	0	alignment_overlap=17	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1001470__1__REL606__4603794__1__17____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=13	max_right_minus=0	max_right_plus=13	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=17	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	142		REL606	1032400	-1	REL606	2252780	-1	0	alignment_overlap=4	coverage_minus=18	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1032400__0__REL606__2252784__0__4____36__36__0__1	max_left=30	max_left_minus=30	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=12	max_min_right_plus=0	max_right=12	max_right_minus=12	max_right_plus=0	min_overlap_score=78	pos_hash_score=10	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=18	total_reads=1
JC	40		REL606	1041732	1	REL606	2899620	1	0	alignment_overlap=1	coverage_minus=8	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__1041732__1__REL606__2899619__1__1____36__36__0__0	max_left=13	max_left_minus=13	max_left_plus=13	max_min_left=13	max_min_left_minus=13	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=32	max_right_minus=32	max_right_plus=30	min_overlap_score=164	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=18
JC	14		REL606	1055619	1	REL606	1055624	-1	0	alignment_overlap=0	coverage_minus=31	coverage_plus=36	flanking_left=36	flanking_right=36	key=REL606__1055619__1__REL606__1055624__0__0____36__36__0__0	max_left=35	max_left_minus=34	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=16	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=26	max_right_minus=25	max_right_plus=26	min_overlap_score=708	pos_hash_score=40	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=67	total_reads=97
JC	131		REL606	1055619	1	REL606	1055633	-1	-3	alignment_overlap=-3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1055619__1__REL606__1055633__0__-3__CTG__36__36__0__0	max_left=30	max_left_minus=0	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=0	max_right_minus=0	max_right_plus=0	min_overlap_score=-2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CTG
JC	159		REL606	1055633	-1	REL606	3949736	-1	0	alignment_overlap=15	coverage_minus=13	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1055633__0__REL606__3949751__0__15____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=19	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=7	max_right=8	max_right_minus=8	max_right_plus=7	min_overlap_score=86	pos_hash_score=13	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=21	total_reads=1
JC	72		REL606	1063449	1	REL606	3349650	1	0	alignment_overlap=12	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1063449__1__REL606__3349638__1__12____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=46	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	21		REL606	1075803	1	REL606	1075810	-1	0	alignment_overlap=0	coverage_minus=20	coverage_plus=33	flanking_left=36	flanking_right=36	key=REL606__1075803__1__REL606__1075810__0__0____36__36__0__0	max_left=35	max_left_minus=34	max_left_plus=35	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=24	max_right_minus=23	max_right_plus=24	min_overlap_score=536	pos_hash_score=31	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=53	total_reads=77
JC	135		REL606	1078750	1	REL606	3150232	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1078750__1__REL606__3150221__1__11____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=13	max_right_minus=0	max_right_plus=13	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	85		REL606	1116398	-1	REL606	1345574	1	0	alignment_overlap=4	coverage_minus=12	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__1116398__0__REL606__1345570__1__4____36__36__0__0	max_left=10	max_left_minus=7	max_left_plus=10	max_min_left=10	max_min_left_minus=7	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=31	max_right_minus=31	max_right_plus=31	min_overlap_score=127	pos_hash_score=14	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=25	total_reads=4
JC	39		REL606	1122285	-1	REL606	3725720	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=18	flanking_left=36	flanking_right=36	key=REL606__1122285__0__REL606__3725709__1__11____36__36__0__0	max_left=11	max_left_minus=0	max_left_plus=11	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=11	max_min_right_minus=0	max_min_right_plus=11	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=141	pos_hash_score=10	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=18	total_reads=18
JC	156		REL606	1196590	-1	REL606	2454734	-1	-3	alignment_overlap=-3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1196590__0__REL606__2454734__0__-3__GGC__36__36__0__0	max_left=16	max_left_minus=16	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=13	max_min_right_minus=13	max_min_right_plus=0	max_right=13	max_right_minus=13	max_right_plus=0	min_overlap_score=13	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=GGC
JC	34		REL606	1261054	-1	REL606	2765391	-1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=24	flanking_left=36	flanking_right=36	key=REL606__1261054__0__REL606__2765399__0__8____36__36__0__0	max_left=12	max_left_minus=0	max_left_plus=12	max_min_left=12	max_min_left_minus=0	max_min_left_plus=12	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=137	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=24	total_reads=24
JC	49		REL606	1261055	-1	REL606	2529093	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=15	flanking_left=36	flanking_right=36	key=REL606__1261055__0__REL606__2529084__1__9____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=55	pos_hash_score=10	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=15	total_reads=15
JC	66		REL606	1270438	-1	REL606	2786208	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__1270438__0__REL606__2786201__1__7____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=50	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	52		REL606	1286705	1	REL606	1724591	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__1286705__1__REL606__1724584__1__7____36__36__0__0	max_left=11	max_left_minus=0	max_left_plus=11	max_min_left=11	max_min_left_minus=0	max_min_left_plus=11	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=105	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=14	total_reads=14
JC	60		REL606	1286705	1	REL606	3092577	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1286705__1__REL606__3092570__1__7____36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=90	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	80		REL606	1322215	-1	REL606	4141016	-1	0	alignment_overlap=7	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1322215__0__REL606__4141023__0__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=11	max_min_right_minus=11	max_min_right_plus=0	max_right=11	max_right_minus=11	max_right_plus=0	min_overlap_score=40	pos_hash_score=6	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	20		REL606	1345572	1	REL606	1345580	-1	0	alignment_overlap=0	coverage_minus=30	coverage_plus=41	flanking_left=36	flanking_right=36	key=REL606__1345572__1__REL606__1345580__0__0____36__36__0__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=17	max_min_left_minus=16	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=648	pos_hash_score=42	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=71	total_reads=78
JC	6		REL606	1460927	-1	REL606	3028796	1	0	alignment_overlap=2	coverage_minus=32	coverage_plus=47	flanking_left=36	flanking_right=36	key=REL606__1460929__0__REL606__3028796__1__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=607	pos_hash_score=47	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=79	total_reads=113
JC	37		REL606	1461222	-1	REL606	2886355	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__1461222__0__REL606__2886347__1__8____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=27	max_right_minus=0	max_right_plus=27	min_overlap_score=82	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=19	total_reads=19
JC	74		REL606	1478524	1	REL606	4294318	-1	-6	alignment_overlap=-6	coverage_minus=1	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__1478524__1__REL606__4294318__0__-6__CAGACA__36__36__0__0	max_left=14	max_left_minus=12	max_left_plus=14	max_min_left=14	max_min_left_minus=12	max_min_left_plus=14	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=15	max_right_plus=16	min_overlap_score=96	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7	unique_read_sequence=CAGACA
JC	89		REL606	1483136	-1	REL606	1968159	-1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=3	flanking_left=36	flanking_right=36	key=REL606__1483136__0__REL606__1968166__0__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=23	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	47		REL606	1495815	1	REL606	4038529	1	0	alignment_overlap=6	coverage_minus=15	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1495815__1__REL606__4038523__1__6____36__36__0__0	max_left=29	max_left_minus=29	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=97	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=15	total_reads=15
JC	139		REL606	1509029	1	REL606	4005791	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1509029__1__REL606__4005791__1__0____36__36__0__0	max_left=22	max_left_minus=0	max_left_plus=22	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=14	max_right_minus=0	max_right_plus=14	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	105		REL606	1539179	-1	REL606	1855871	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1539179__0__REL606__1855871__0__0____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	41		REL606	1578713	-1	REL606	4207806	1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1578713__0__REL606__4207797__1__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=57	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=17	total_reads=17
JC	53		REL606	1595304	1	REL606	4313465	1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=13	flanking_left=36	flanking_right=36	key=REL606__1595304__1__REL606__4313455__1__10____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=58	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=13	total_reads=13
JC	8		REL606	1633387	-1	REL606	1633394	1	0	alignment_overlap=0	coverage_minus=65	coverage_plus=39	flanking_left=36	flanking_right=36	key=REL606__1633387__0__REL606__1633394__1__0____36__36__0__0	max_left=35	max_left_minus=34	max_left_plus=35	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=34	max_right_minus=34	max_right_plus=34	min_overlap_score=1002	pos_hash_score=50	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=104	total_reads=107
JC	32		REL606	1683065	-1	REL606	1739854	-1	0	alignment_overlap=5	coverage_minus=0	coverage_plus=43	flanking_left=36	flanking_right=36	key=REL606__1683065__0__REL606__1739859__0__5____36__36__0__0	max_left=10	max_left_minus=0	max_left_plus=10	max_min_left=10	max_min_left_minus=0	max_min_left_plus=10	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=0	max_right_plus=30	min_overlap_score=244	pos_hash_score=11	reject=NJ	side_1_annotate_key=gene	side_1_overlap=5	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=43	total_reads=43
JC	12		REL606	1734709	1	REL606	4504271	-1	0	alignment_overlap=0	coverage_minus=40	coverage_plus=63	flanking_left=36	flanking_right=36	key=REL606__1734709__1__REL606__4504271__0__0____36__36__0__1	max_left=35	max_left_minus=35	max_left_plus=35	max_min_left=11	max_min_left_minus=11	max_min_left_plus=0	max_min_right=18	max_min_right_minus=18	max_min_right_plus=18	max_right=25	max_right_minus=25	max_right_plus=18	min_overlap_score=908	pos_hash_score=33	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=103	total_reads=103
JC	31		REL606	1740390	1	REL606	2234026	1	0	alignment_overlap=7	coverage_minus=53	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1740390__1__REL606__2234019__1__7____36__36__0__0	max_left=28	max_left_minus=28	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=0	max_right=8	max_right_minus=8	max_right_plus=0	min_overlap_score=298	pos_hash_score=16	reject=NJ	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=53	total_reads=53
JC	63		REL606	1741304	1	REL606	1837284	1	0	alignment_overlap=14	coverage_minus=11	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1741304__1__REL606__1837270__1__14____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=49	pos_hash_score=6	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	154		REL606	1748420	-1	REL606	4503504	1	0	alignment_overlap=1	coverage_minus=6	coverage_plus=7	flanking_left=36	flanking_right=36	key=REL606__1748421__0__REL606__4503504__1__1____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=14	max_min_right_minus=9	max_min_right_plus=14	max_right=31	max_right_minus=9	max_right_plus=31	min_overlap_score=44	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=13	total_reads=1
JC	107		REL606	1800598	1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__1800598__1__REL606__2583282__0__0____36__36__1__0	max_left=31	max_left_minus=31	max_left_plus=30	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=1	max_right=1	max_right_minus=1	max_right_plus=1	min_overlap_score=2	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1
JC	58		REL606	1807829	-1	REL606	4576786	1	0	alignment_overlap=13	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__1807829__0__REL606__4576773__1__13____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=48	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=13	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	65		REL606	1815295	1	REL606	3536789	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__1815295__1__REL606__3536798__0__9____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=44	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	133		REL606	1817920	1	REL606	2766315	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1817920__1__REL606__2766318__0__3____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	51		REL606	1861607	1	REL606	4060435	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=14	flanking_left=36	flanking_right=36	key=REL606__1861607__1__REL606__4060444__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=60	pos_hash_score=9	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=14	total_reads=14
JC	42		REL606	1906441	-1	REL606	4231514	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1906441__0__REL606__4231524__0__10____36__36__0__0	max_left=7	max_left_minus=0	max_left_plus=7	max_min_left=7	max_min_left_minus=0	max_min_left_plus=7	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=25	max_right_minus=0	max_right_plus=25	min_overlap_score=74	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=17	total_reads=17
JC	43		REL606	1961263	-1	REL606	3546644	1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=17	flanking_left=36	flanking_right=36	key=REL606__1961263__0__REL606__3546633__1__11____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=52	pos_hash_score=8	reject=NJ	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=17	total_reads=17
JC	68		REL606	1963600	1	REL606	3161580	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=10	flanking_left=36	flanking_right=36	key=REL606__1963600__1__REL606__3161591__0__11____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=31	pos_hash_score=8	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=10	total_reads=10
JC	73		REL606	1965852	-1	REL606	3798820	-1	0	alignment_overlap=6	coverage_minus=0	coverage_plus=8	flanking_left=36	flanking_right=36	key=REL606__1965852__0__REL606__3798826__0__6____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=45	pos_hash_score=5	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=6	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=8	total_reads=8
JC	5		REL606	1974039	-1	REL606	4462701	-1	0	alignment_overlap=2	coverage_minus=44	coverage_plus=44	flanking_left=36	flanking_right=36	key=REL606__1974041__0__REL606__4462701__0__2____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=15	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=33	max_right_minus=32	max_right_plus=33	min_overlap_score=749	pos_hash_score=50	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=2	side_2_redundant=0	total_non_overlap_reads=88	total_reads=122
JC	113		REL606	1986299	1	REL606	2081056	-1	0	alignment_overlap=1	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__1986299__1__REL606__2081057__0__1____36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=17	max_min_right_minus=17	max_min_right_plus=0	max_right=17	max_right_minus=17	max_right_plus=0	min_overlap_score=17	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	94		REL606	1997431	-1	REL606	2242827	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__1997431__0__REL606__2242827__1__0____36__36__0__0	max_left=17	max_left_minus=0	max_left_plus=17	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=16	max_min_right_minus=0	max_min_right_plus=16	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=31	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	59		REL606	2061631	-1	REL606	2599785	1	0	alignment_overlap=7	coverage_minus=0	coverage_plus=12	flanking_left=36	flanking_right=36	key=REL606__2061631__0__REL606__2599778__1__7____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=28	max_right_minus=0	max_right_plus=28	min_overlap_score=49	pos_hash_score=9	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=7	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=12	total_reads=12
JC	78		REL606	2151362	1	REL606	3525884	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__2151362__1__REL606__3525884__1__0____36__36__0__0	max_left=14	max_left_minus=0	max_left_plus=14	max_min_left=14	max_min_left_minus=0	max_min_left_plus=14	max_min_right=14	max_min_right_minus=0	max_min_right_plus=14	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=84	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	62		REL606	2151364	1	REL606	3733709	-1	0	alignment_overlap=9	coverage_minus=0	coverage_plus=11	flanking_left=36	flanking_right=36	key=REL606__2151364__1__REL606__3733718__0__9____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=41	pos_hash_score=5	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	93		REL606	2189879	-1	REL606	2517199	1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__2189879__0__REL606__2517199__1__0____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=0	max_right_plus=35	min_overlap_score=2	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	136		REL606	2263688	1	REL606	4304749	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2263688__1__REL606__4304752__0__3____36__36__0__1	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	38		REL606	2273134	1	REL606	3439421	1	0	alignment_overlap=12	coverage_minus=0	coverage_plus=19	flanking_left=36	flanking_right=36	key=REL606__2273134__1__REL606__3439409__1__12____36__36__0__0	max_left=5	max_left_minus=0	max_left_plus=5	max_min_left=5	max_min_left_minus=0	max_min_left_plus=5	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=23	max_right_minus=0	max_right_plus=23	min_overlap_score=74	pos_hash_score=9	reject=NJ	side_1_annotate_key=gene	side_1_overlap=12	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=19	total_reads=19
JC	124		REL606	2287044	1	REL606	2293973	-1	-1	alignment_overlap=-1	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2287044__1__REL606__2293973__0__-1__A__36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=0	max_min_left=5	max_min_left_minus=5	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=30	max_right_minus=30	max_right_plus=0	min_overlap_score=5	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=1	unique_read_sequence=A
JC	100		REL606	2293890	1	REL606	2293897	-1	0	alignment_overlap=0	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2293890__1__REL606__2293897__0__0____36__36__0__0	max_left=16	max_left_minus=0	max_left_plus=16	max_min_left=16	max_min_left_minus=0	max_min_left_plus=16	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=19	max_right_minus=0	max_right_plus=19	min_overlap_score=16	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	116		REL606	2293982	-1	REL606	4603892	-1	0	alignment_overlap=10	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2293982__0__REL606__4603902__0__10____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	79		REL606	2333842	-1	REL606	2614612	1	0	alignment_overlap=14	coverage_minus=0	coverage_plus=6	flanking_left=36	flanking_right=36	key=REL606__2333842__0__REL606__2614598__1__14____36__36__0__0	max_left=8	max_left_minus=0	max_left_plus=8	max_min_left=8	max_min_left_minus=0	max_min_left_plus=8	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=17	max_right_minus=0	max_right_plus=17	min_overlap_score=40	pos_hash_score=6	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=14	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	76		REL606	2353146	1	REL606	3349651	1	0	alignment_overlap=10	coverage_minus=7	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2353146__1__REL606__3349641__1__10____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=27	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=7	total_reads=7
JC	146		REL606	2424788	-1	REL606	4295728	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2424788__0__REL606__4295728__0__0____36__36__0__0	max_left=18	max_left_minus=18	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	122		REL606	2445662	-1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2445662__0__REL606__2583282__0__0____36__36__1__0	max_left=32	max_left_minus=32	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=2	max_min_right_plus=0	max_right=2	max_right_minus=2	max_right_plus=0	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	35		REL606	2459554	-1	REL606	3686151	-1	0	alignment_overlap=10	coverage_minus=22	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2459554__0__REL606__3686161__0__10____36__36__0__0	max_left=25	max_left_minus=25	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=8	max_min_right_minus=8	max_min_right_plus=0	max_right=8	max_right_minus=8	max_right_plus=0	min_overlap_score=97	pos_hash_score=10	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=22	total_reads=22
JC	97		REL606	2488941	1	REL606	4574322	1	0	alignment_overlap=8	coverage_minus=2	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2488941__1__REL606__4574314__1__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=3	max_min_right_minus=3	max_min_right_plus=0	max_right=3	max_right_minus=3	max_right_plus=0	min_overlap_score=4	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	137		REL606	2489070	1	REL606	2583282	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2489070__1__REL606__2583282__0__0____36__36__1__0	max_left=33	max_left_minus=33	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	67		REL606	2560488	1	REL606	4039097	1	0	alignment_overlap=9	coverage_minus=11	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2560488__1__REL606__4039088__1__9____36__36__0__0	max_left=26	max_left_minus=26	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=44	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=9	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=11	total_reads=11
JC	45		REL606	2574516	1	REL606	3751241	-1	0	alignment_overlap=10	coverage_minus=0	coverage_plus=16	flanking_left=36	flanking_right=36	key=REL606__2574516__1__REL606__3751251__0__10____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=24	max_right_minus=0	max_right_plus=24	min_overlap_score=57	pos_hash_score=10	reject=NJ	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=16	total_reads=16
JC	108		REL606	2583282	-1	REL606	4198108	-1	0	alignment_overlap=0	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__4198108__0__0____36__36__0__0	max_left=1	max_left_minus=1	max_left_plus=0	max_min_left=1	max_min_left_minus=1	max_min_left_plus=0	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=35	max_right_minus=35	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	132		REL606	2583282	-1	REL606	4467545	-1	0	alignment_overlap=3	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2583282__0__REL606__4467548__0__3____36__36__0__0	max_left=4	max_left_minus=0	max_left_plus=4	max_min_left=4	max_min_left_minus=0	max_min_left_plus=4	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=4	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	19		REL606	2774435	1	REL606	2899617	-1	0	alignment_overlap=1	coverage_minus=38	coverage_plus=33	flanking_left=36	flanking_right=36	key=REL606__2774434__1__REL606__2899617__0__1____36__36__0__1	max_left=32	max_left_minus=31	max_left_plus=32	max_min_left=16	max_min_left_minus=16	max_min_left_plus=14	max_min_right=17	max_min_right_minus=17	max_min_right_plus=17	max_right=34	max_right_minus=33	max_right_plus=34	min_overlap_score=608	pos_hash_score=46	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=repeat	side_2_overlap=1	side_2_redundant=1	total_non_overlap_reads=71	total_reads=78
JC	11		REL606	2822187	1	REL606	2996588	-1	0	alignment_overlap=5	coverage_minus=34	coverage_plus=38	flanking_left=36	flanking_right=36	key=REL606__2822182__1__REL606__2996588__0__5____36__36__1__0	max_left=30	max_left_minus=30	max_left_plus=28	max_min_left=15	max_min_left_minus=15	max_min_left_plus=14	max_min_right=15	max_min_right_minus=15	max_min_right_plus=15	max_right=30	max_right_minus=30	max_right_plus=30	min_overlap_score=563	pos_hash_score=46	side_1_annotate_key=repeat	side_1_overlap=0	side_1_redundant=1	side_2_annotate_key=gene	side_2_overlap=5	side_2_redundant=0	total_non_overlap_reads=72	total_reads=104
JC	129		REL606	2968431	1	REL606	3603929	1	0	alignment_overlap=2	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2968431__1__REL606__3603927__1__2____36__36__0__0	max_left=3	max_left_minus=0	max_left_plus=3	max_min_left=3	max_min_left_minus=0	max_min_left_plus=3	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=29	max_right_minus=0	max_right_plus=29	min_overlap_score=3	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	153		REL606	2989360	-1	REL606	4203217	-1	-1	alignment_overlap=-1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__2989360__0__REL606__4203217__0__-1__C__36__36__0__0	max_left=15	max_left_minus=0	max_left_plus=15	max_min_left=15	max_min_left_minus=0	max_min_left_plus=15	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=16	max_right_minus=0	max_right_plus=16	min_overlap_score=15	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=C
JC	25		REL606	3028804	-1	REL606	4550679	1	0	alignment_overlap=2	coverage_minus=27	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__3028804__0__REL606__4550677__1__2____36__36__0__1	max_left=33	max_left_minus=30	max_left_plus=33	max_min_left=16	max_min_left_minus=14	max_min_left_plus=16	max_min_right=17	max_min_right_minus=16	max_min_right_plus=17	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=423	pos_hash_score=32	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=54	total_reads=70
JC	10		REL606	3035123	1	REL606	3651091	1	0	alignment_overlap=3	coverage_minus=44	coverage_plus=27	flanking_left=36	flanking_right=36	key=REL606__3035121__1__REL606__3651090__1__3____36__36__0__1	max_left=32	max_left_minus=32	max_left_plus=32	max_min_left=16	max_min_left_minus=15	max_min_left_plus=16	max_min_right=16	max_min_right_minus=16	max_min_right_plus=16	max_right=32	max_right_minus=32	max_right_plus=29	min_overlap_score=614	pos_hash_score=43	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=2	side_2_redundant=1	total_non_overlap_reads=71	total_reads=105
JC	18		REL606	3035125	-1	REL606	3894996	-1	0	alignment_overlap=2	coverage_minus=35	coverage_plus=37	flanking_left=36	flanking_right=36	key=REL606__3035125__0__REL606__3894998__0__2____36__36__0__1	max_left=33	max_left_minus=33	max_left_plus=33	max_min_left=16	max_min_left_minus=16	max_min_left_plus=16	max_min_right=17	max_min_right_minus=17	max_min_right_plus=16	max_right=33	max_right_minus=33	max_right_plus=33	min_overlap_score=658	pos_hash_score=49	side_1_annotate_key=gene	side_1_overlap=2	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=72	total_reads=81
JC	104		REL606	3150221	1	REL606	4603814	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4603825__0__11____36__36__0__0	max_left=22	max_left_minus=22	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=1	max_min_right_minus=1	max_min_right_plus=0	max_right=1	max_right_minus=1	max_right_plus=0	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	120		REL606	3150221	1	REL606	4224044	-1	0	alignment_overlap=4	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4224048__0__4____36__36__0__0	max_left=22	max_left_minus=22	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=10	max_min_right_minus=10	max_min_right_plus=0	max_right=10	max_right_minus=10	max_right_plus=0	min_overlap_score=10	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=4	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	152		REL606	3150221	1	REL606	4467438	-1	0	alignment_overlap=11	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__4467449__0__11____36__36__0__0	max_left=13	max_left_minus=13	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=12	max_min_right_minus=12	max_min_right_plus=0	max_right=12	max_right_minus=12	max_right_plus=0	min_overlap_score=12	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	155		REL606	3150221	1	REL606	3972844	-1	0	alignment_overlap=11	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__3150221__1__REL606__3972855__0__11____36__36__0__1	max_left=2	max_left_minus=0	max_left_plus=2	max_min_left=2	max_min_left_minus=0	max_min_left_plus=2	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=21	max_right_minus=0	max_right_plus=21	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=11	side_1_redundant=0	side_2_annotate_key=repeat	side_2_overlap=0	side_2_redundant=1	total_non_overlap_reads=1	total_reads=1
JC	70		REL606	3160376	-1	REL606	3684005	-1	0	alignment_overlap=10	coverage_minus=9	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3160376__0__REL606__3684015__0__10____36__36__0__0	max_left=24	max_left_minus=24	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=5	max_min_right_minus=5	max_min_right_plus=0	max_right=5	max_right_minus=5	max_right_plus=0	min_overlap_score=41	pos_hash_score=9	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=10	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	81		REL606	3227803	-1	REL606	4021916	-1	0	alignment_overlap=8	coverage_minus=6	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3227803__0__REL606__4021924__0__8____36__36__0__0	max_left=20	max_left_minus=20	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=7	max_min_right_minus=7	max_min_right_plus=0	max_right=7	max_right_minus=7	max_right_plus=0	min_overlap_score=32	pos_hash_score=5	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=6	total_reads=6
JC	33		REL606	3279785	-1	REL606	3855588	-1	0	alignment_overlap=8	coverage_minus=25	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3279785__0__REL606__3855596__0__8____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=9	max_min_right_minus=9	max_min_right_plus=0	max_right=9	max_right_minus=9	max_right_plus=0	min_overlap_score=133	pos_hash_score=14	reject=NJ	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=25	total_reads=25
JC	71		REL606	3378875	1	REL606	3990931	1	0	alignment_overlap=8	coverage_minus=0	coverage_plus=9	flanking_left=36	flanking_right=36	key=REL606__3378875__1__REL606__3990923__1__8____36__36__0__0	max_left=6	max_left_minus=0	max_left_plus=6	max_min_left=6	max_min_left_minus=0	max_min_left_plus=6	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=26	max_right_minus=0	max_right_plus=26	min_overlap_score=36	pos_hash_score=7	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=8	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=9	total_reads=9
JC	13		REL606	3483358	-1	REL606	3483363	1	0	alignment_overlap=0	coverage_minus=58	coverage_plus=37	flanking_left=36	flanking_right=36	key=REL606__3483358__0__REL606__3483363__1__0____36__36__0__0	max_left=34	max_left_minus=34	max_left_plus=34	max_min_left=17	max_min_left_minus=17	max_min_left_plus=17	max_min_right=18	max_min_right_minus=18	max_min_right_plus=16	max_right=35	max_right_minus=35	max_right_plus=31	min_overlap_score=864	pos_hash_score=49	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=95	total_reads=99
JC	90		REL606	3575204	1	REL606	3897705	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=2	flanking_left=36	flanking_right=36	key=REL606__3575204__1__REL606__3897704__1__1____36__36__0__0	max_left=13	max_left_minus=0	max_left_plus=13	max_min_left=13	max_min_left_minus=0	max_min_left_plus=13	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=15	max_right_minus=0	max_right_plus=15	min_overlap_score=26	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=2	total_reads=2
JC	157		REL606	3714689	1	REL606	3715177	-1	0	alignment_overlap=3	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3714689__1__REL606__3715180__0__3____36__36__0__0	max_left=27	max_left_minus=27	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=6	max_min_right_minus=6	max_min_right_plus=0	max_right=6	max_right_minus=6	max_right_plus=0	min_overlap_score=6	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=3	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	86		REL606	3730797	-1	REL606	4173513	-1	0	alignment_overlap=1	coverage_minus=3	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__3730797__0__REL606__4173514__0__1____36__36__0__0	max_left=15	max_left_minus=15	max_left_plus=0	max_min_left=14	max_min_left_minus=14	max_min_left_plus=0	max_min_right=15	max_min_right_minus=15	max_min_right_plus=0	max_right=15	max_right_minus=15	max_right_plus=0	min_overlap_score=44	pos_hash_score=2	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=3	total_reads=3
JC	111		REL606	4185582	-1	REL606	4313119	1	-5	alignment_overlap=-5	coverage_minus=1	coverage_plus=0	flanking_left=36	flanking_right=36	key=REL606__4185582__0__REL606__4313119__1__-5__CACAG__36__36__0__0	max_left=17	max_left_minus=17	max_left_plus=0	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=14	max_min_right_minus=14	max_min_right_plus=0	max_right=14	max_right_minus=14	max_right_plus=0	min_overlap_score=14	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=0	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1	unique_read_sequence=CACAG
JC	138		REL606	4323611	1	REL606	4394133	-1	0	alignment_overlap=15	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4323611__1__REL606__4394148__0__15____36__36__0__0	max_left=1	max_left_minus=0	max_left_plus=1	max_min_left=1	max_min_left_minus=0	max_min_left_plus=1	max_min_right=0	max_min_right_minus=0	max_min_right_plus=0	max_right=20	max_right_minus=0	max_right_plus=20	min_overlap_score=1	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=15	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
JC	101		REL606	4467520	1	REL606	4595822	1	0	alignment_overlap=1	coverage_minus=0	coverage_plus=1	flanking_left=36	flanking_right=36	key=REL606__4467520__1__REL606__4595821__1__1____36__36__0__0	max_left=33	max_left_minus=0	max_left_plus=33	max_min_left=0	max_min_left_minus=0	max_min_left_plus=0	max_min_right=2	max_min_right_minus=0	max_min_right_plus=2	max_right=2	max_right_minus=0	max_right_plus=2	min_overlap_score=2	pos_hash_score=1	reject=NJ,COV	side_1_annotate_key=gene	side_1_overlap=1	side_1_redundant=0	side_2_annotate_key=gene	side_2_overlap=0	side_2_redundant=0	total_non_overlap_reads=1	total_reads=1
UN	161		REL606	15415	16699
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UN	217		REL606	546962	590292
UN	219		REL606	590348	590441
UN	220		REL606	590747	592025
UN	221		REL606	619148	619854
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UN	226		REL606	678788	678802
UN	227		REL606	678879	678891
UN	228		REL606	678991	679005
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UN	236		REL606	712873	712973
UN	237		REL606	713922	714001
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UN	239		REL606	714199	714286
UN	240		REL606	714431	714633
UN	241		REL606	714739	714813
UN	242		REL606	717606	717636
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UN	244		REL606	717873	717963
UN	245		REL606	718030	718146
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UN	247		REL606	718554	718569
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UN	249		REL606	719177	719177
UN	250		REL606	719179	719179
UN	251		REL606	719181	719194
UN	252		REL606	719381	719399
UN	253		REL606	719526	719534
UN	254		REL606	719588	719588
UN	255		REL606	719596	719606
UN	256		REL606	761467	761481
UN	257		REL606	761678	761692
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UN	259		REL606	761883	761898
UN	260		REL606	761960	761972
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UN	267		REL606	942736	942853
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UN	281		REL606	1112029	1112029
UN	282		REL606	1112141	1112195
UN	284		REL606	1193644	1194355
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UN	286		REL606	1269426	1269439
UN	287		REL606	1269560	1269560
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UN	293		REL606	1270325	1270376
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UN	296		REL606	1270597	1270597
UN	297		REL606	1270600	1270657
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UN	299		REL606	1287070	1287091
UN	300		REL606	1287363	1287384
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UN	327		REL606	1503202	1503702
UN	328		REL606	1506264	1506359
UN	329		REL606	1506533	1506790
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UN	332		REL606	1544702	1544783
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UN	334		REL606	1545116	1545263
UN	335		REL606	1545387	1545670
UN	337		REL606	1600414	1600580
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UN	341		REL606	1601128	1601166
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UN	344		REL606	1601360	1601365
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UN	347		REL606	1601545	1601773
UN	348		REL606	1601835	1601844
UN	349		REL606	1601909	1602100
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UN	351		REL606	1602744	1602801
UN	352		REL606	1603248	1603258
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UN	355		REL606	1604748	1604759
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UN	365		REL606	1685888	1686064
UN	368		REL606	1857092	1858374
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UN	375		REL606	2000269	2000310
UN	378		REL606	2031767	2031767
UN	379		REL606	2031837	2031854
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UN	382		REL606	2032509	2032510
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UN	392		REL606	2086541	2086578
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UN	395		REL606	2100301	2122428
UN	398		REL606	2128629	2129336
UN	399		REL606	2143095	2143801
UN	400		REL606	2180419	2180464
UN	401		REL606	2180524	2180571
UN	402		REL606	2252683	2252683
UN	403		REL606	2254481	2254634
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UN	405		REL606	2254707	2255045
UN	406		REL606	2262766	2263477
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